#!/usr/local/bin/bash
# convert *.aln to *.ptn

for i in ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 CYTB ; do
echo $i
j=work-$i
clus2mol -i $i $j.aln | rminsdel > $j.ptn
done

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