#!/usr/local/bin/bash
# molphy nj analysis

outgroup=24
file=work-conc

protml -mfD $file.ptn > $file.dis
njdist -o ${outgroup} -w -t$file-nj -T$file-nj $file.dis > $file.nj
mv njdist.eps $file-nj.eps
repnamegb $file-nj.eps > $file-nj-name.eps
bbfix $file-nj-name.eps


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