#!/usr/local/bin/bash
# run clustalw

for i in ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 CYTB ; do
echo 1
echo work-$i.psq
echo 2
echo 1
echo 
echo
echo X
echo
done > clustalrun.txt
echo X >> clustalrun.txt

clustalw < clustalrun.txt > clustallog.txt

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